J4_4V8Z_009

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Z_009 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0409

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

4V8Z|1|B5|G|2130
4V8Z|1|B5|A|2131
4V8Z|1|B5|C|2132
4V8Z|1|B5|U|2133
4V8Z|1|B5|G|2134
*
4V8Z|1|B5|C|2146
4V8Z|1|B5|A|2147
4V8Z|1|B5|U|2148
4V8Z|1|B5|A|2149
4V8Z|1|B5|G|2150
*
4V8Z|1|B5|U|2186
4V8Z|1|B5|G|2187
4V8Z|1|B5|A|2188
4V8Z|1|B5|U|2189
4V8Z|1|B5|U|2190
*
4V8Z|1|B5|A|2317
4V8Z|1|B5|U|2318
4V8Z|1|B5|U|2319
4V8Z|1|B5|A|2320
4V8Z|1|B5|A|2321
4V8Z|1|B5|C|2322

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain Bn

60S RIBOSOMAL PROTEIN L41-B