J4_4V8Z_010
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8Z_010 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.0879
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8Z|1|B5|C|2192
4V8Z|1|B5|U|2193
4V8Z|1|B5|G|2194
*
4V8Z|1|B5|C|2248
4V8Z|1|B5|G|2249
*
4V8Z|1|B5|C|2267
4V8Z|1|B5|U|2268
4V8Z|1|B5|U|2269
4V8Z|1|B5|A|2270
4V8Z|1|B5|A|2271
4V8Z|1|B5|G|2272
4V8Z|1|B5|G|2273
4V8Z|1|B5|U|2274
4V8Z|1|B5|A|2275
4V8Z|1|B5|G|2276
*
4V8Z|1|B5|U|2310
4V8Z|1|B5|G|2311
4V8Z|1|B5|A|2312
4V8Z|1|B5|A|2313
4V8Z|1|B5|U|2314
4V8Z|1|B5|G|2315
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain Bn
- 60S RIBOSOMAL PROTEIN L41-B
- Chain CW
- Transfer RNA; tRNA
Coloring options: