J4_4V91_002

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V91_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1178

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V91|1|1|C|185
4V91|1|1|U|186
4V91|1|1|A|187
4V91|1|1|U|188
4V91|1|1|G|189
*
4V91|1|1|C|205
4V91|1|1|G|206
4V91|1|1|U|207
4V91|1|1|C|208
*
4V91|1|1|G|212
4V91|1|1|A|213
4V91|1|1|G|214
*
4V91|1|1|C|226
4V91|1|1|G|227
4V91|1|1|U|228
4V91|1|1|G|229
4V91|1|1|U|230
4V91|1|1|G|231

Current chains

Chain 1

25S RRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain C

UL4

Chain Y

UL24