3D structure

PDB id
4V91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
4V91|1|1|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V91_004 not in the Motif Atlas
Homologous match to J4_8P9A_015
Geometric discrepancy: 0.0703
The information below is about J4_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4V91|1|1|G|1492
4V91|1|1|G|1493
4V91|1|1|U|1494
4V91|1|1|U|1495
4V91|1|1|C|1496
*
4V91|1|1|G|1520
4V91|1|1|G|1521
4V91|1|1|U|1522
4V91|1|1|U|1523
4V91|1|1|A|1524
4V91|1|1|G|1525
*
4V91|1|1|C|1614
4V91|1|1|C|1615
*
4V91|1|1|G|1829
4V91|1|1|G|1830
4V91|1|1|U|1831
4V91|1|1|C|1832
4V91|1|1|G|1833
4V91|1|1|U|1834
4V91|1|1|A|1835
4V91|1|1|C|1836

Current chains

Chain 1
25S RRNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain R
EL19
Chain X
UL23
Chain g
EL34
Chain h
UL29
Chain j
EL37
Chain k
EL38
Chain l
EL39

Coloring options:


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