J4_4V91_004
3D structure
- PDB id
- 4V91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V91|1|1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V91_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0703
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V91|1|1|G|1492
4V91|1|1|G|1493
4V91|1|1|U|1494
4V91|1|1|U|1495
4V91|1|1|C|1496
*
4V91|1|1|G|1520
4V91|1|1|G|1521
4V91|1|1|U|1522
4V91|1|1|U|1523
4V91|1|1|A|1524
4V91|1|1|G|1525
*
4V91|1|1|C|1614
4V91|1|1|C|1615
*
4V91|1|1|G|1829
4V91|1|1|G|1830
4V91|1|1|U|1831
4V91|1|1|C|1832
4V91|1|1|G|1833
4V91|1|1|U|1834
4V91|1|1|A|1835
4V91|1|1|C|1836
Current chains
- Chain 1
- 25S RRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- EL19
- Chain X
- UL23
- Chain g
- EL34
- Chain h
- UL29
- Chain j
- EL37
- Chain k
- EL38
- Chain l
- EL39
Coloring options: