J4_4V91_010

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V91_010 not in the Motif Atlas

Homologous match to J4_8CRE_005

Geometric discrepancy: 0.1348

The information below is about J4_8CRE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V91|1|1|G|1674
4V91|1|1|G|1675
*
4V91|1|1|C|1693
4V91|1|1|U|1694
*
4V91|1|1|A|1752
4V91|1|1|G|1753
*
4V91|1|1|U|1772
4V91|1|1|C|1773

Current chains

Chain 1

25S RRNA

Nearby chains

Chain U

EL22

Chain g

EL34

Chain k

EL38