J4_4V92_003
3D structure
- PDB id
- 4V92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 4V92|1|A2|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V92_003 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1138
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V92|1|A2|C|99
4V92|1|A2|A|100
4V92|1|A2|U|101
4V92|1|A2|U|102
4V92|1|A2|A|103
4V92|1|A2|A|104
4V92|1|A2|A|105
4V92|1|A2|U|106
4V92|1|A2|C|107
*
4V92|1|A2|G|307
4V92|1|A2|C|308
4V92|1|A2|C|309
*
4V92|1|A2|G|357
4V92|1|A2|U|358
4V92|1|A2|A|359
4V92|1|A2|A|360
4V92|1|A2|C|361
*
4V92|1|A2|G|383
4V92|1|A2|G|384
Current chains
- Chain A2
- 18S RRNA
Nearby chains
- Chain BE
- ES4
- Chain BI
- ES8
- Chain BJ
- US4
- Chain BX
- US12
Coloring options: