J4_4V95_016

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V95|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V95_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0956

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V95|1|CA|G|142
4V95|1|CA|A|143
4V95|1|CA|G|144
*
4V95|1|CA|C|178
4V95|1|CA|A|179
4V95|1|CA|U|180
4V95|1|CA|G|181
4V95|1|CA|U|182
4V95|1|CA|G|183
*
4V95|1|CA|C|194
4V95|1|CA|A|195
4V95|1|CA|A|196
4V95|1|CA|A|197
4V95|1|CA|G|198
*
4V95|1|CA|C|219
4V95|1|CA|G|220
4V95|1|CA|C|221

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal Protein S16

Chain CT

30S Ribosomal Protein S20