J4_4V9C_004

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V9C|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9C_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1804

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9C|1|BA|C|268
4V9C|1|BA|C|269
*
4V9C|1|BA|G|370
4V9C|1|BA|A|371
4V9C|1|BA|G|372
4V9C|1|BA|U|373
4V9C|1|BA|A|374
4V9C|1|BA|G|375
*
4V9C|1|BA|U|399
4V9C|1|BA|G|400
4V9C|1|BA|A|401
4V9C|1|BA|A|402
4V9C|1|BA|U|403
4V9C|1|BA|A|404
4V9C|1|BA|U|405
4V9C|1|BA|G|406
*
4V9C|1|BA|C|421
4V9C|1|BA|A|422
4V9C|1|BA|A|423
4V9C|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28