3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
4V9I|1|AA|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V9I_001 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0558
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V9I|1|AA|G|115
4V9I|1|AA|A|116
4V9I|1|AA|G|117
4V9I|1|AA|U|118
4V9I|1|AA|A|119
4V9I|1|AA|A|120
4V9I|1|AA|C|121
4V9I|1|AA|G|122
*
4V9I|1|AA|U|239
4V9I|1|AA|C|240
*
4V9I|1|AA|G|286
4V9I|1|AA|U|287
4V9I|1|AA|A|288
4V9I|1|AA|G|289
*
4V9I|1|AA|C|311
4V9I|1|AA|C|312

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AL
30S Ribosomal protein S12
Chain AP
30S Ribosomal protein S16
Chain AQ
30S Ribosomal protein S17

Coloring options:


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