J4_4V9I_014

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_014 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0862

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V9I|1|BA|G|2654
4V9I|1|BA|G|2655
4V9I|1|BA|G|2656
4V9I|1|BA|C|2657
*
4V9I|1|BA|G|2685
4V9I|1|BA|A|2686
4V9I|1|BA|C|2687
*
4V9I|1|BA|G|2743
4V9I|1|BA|G|2744
4V9I|1|BA|A|2745
4V9I|1|BA|A|2746
4V9I|1|BA|G|2747
*
4V9I|1|BA|C|2781
4V9I|1|BA|G|2782
4V9I|1|BA|C|2783

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13

Chain BO

50S ribosomal protein L14