J4_4V9I_015
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V9I|1|CA|C|115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9I_015 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0663
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V9I|1|CA|G|109
4V9I|1|CA|A|110
4V9I|1|CA|G|111
4V9I|1|CA|U|112
4V9I|1|CA|A|113
4V9I|1|CA|A|114
4V9I|1|CA|C|115
4V9I|1|CA|G|116
*
4V9I|1|CA|U|235
4V9I|1|CA|C|236
*
4V9I|1|CA|G|282
4V9I|1|CA|U|283
4V9I|1|CA|A|284
4V9I|1|CA|G|285
*
4V9I|1|CA|C|307
4V9I|1|CA|C|308
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CP
- 30S Ribosomal protein S16
- Chain CQ
- 30S Ribosomal protein S17
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