J4_4V9I_017
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4V9I|1|CA|A|799
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9I_017 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0671
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V9I|1|CA|G|559
4V9I|1|CA|G|560
4V9I|1|CA|G|561
*
4V9I|1|CA|C|748
4V9I|1|CA|G|749
4V9I|1|CA|A|750
4V9I|1|CA|A|751
4V9I|1|CA|A|752
4V9I|1|CA|G|753
*
4V9I|1|CA|C|794
4V9I|1|CA|C|795
4V9I|1|CA|C|796
4V9I|1|CA|U|797
4V9I|1|CA|A|798
4V9I|1|CA|A|799
4V9I|1|CA|A|800
4V9I|1|CA|C|801
4V9I|1|CA|G|802
4V9I|1|CA|A|803
4V9I|1|CA|U|804
4V9I|1|CA|G|805
*
4V9I|1|CA|C|857
4V9I|1|CA|C|858
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CH
- 30S Ribosomal protein S8
- Chain CL
- 30S Ribosomal protein S12
- Chain CO
- 30S Ribosomal protein S15
- Chain CQ
- 30S Ribosomal protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: