J4_4V9I_018
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V9I|1|CV|U|8, 4V9I|1|CV|U|48, 4V9I|1|CV|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9I_018 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.1468
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V9I|1|CV|G|7
4V9I|1|CV|U|8
4V9I|1|CV|G|9
4V9I|1|CV|G|10
*
4V9I|1|CV|C|26
4V9I|1|CV|G|27
4V9I|1|CV|U|28
*
4V9I|1|CV|A|44
4V9I|1|CV|A|45
4V9I|1|CV|G|46
4V9I|1|CV|G|47
4V9I|1|CV|U|48
4V9I|1|CV|C|49
4V9I|1|CV|G|50
*
4V9I|1|CV|C|66
4V9I|1|CV|C|67
Current chains
- Chain CV
- P-SITE tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CM
- 30S Ribosomal protein S13
- Chain CY
- A-SITE tRNA
- Chain D0
- 50S ribosomal protein L27
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S ribosomal protein L16
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