J4_4V9I_019

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V9I|1|DA|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.184

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9I|1|DA|C|256
4V9I|1|DA|U|257
*
4V9I|1|DA|G|396
4V9I|1|DA|A|397
4V9I|1|DA|G|398
4V9I|1|DA|U|399
4V9I|1|DA|A|400
4V9I|1|DA|C|401
*
4V9I|1|DA|G|425
4V9I|1|DA|G|426
4V9I|1|DA|A|427
4V9I|1|DA|A|428
4V9I|1|DA|U|429
4V9I|1|DA|C|430
4V9I|1|DA|U|431
4V9I|1|DA|G|432
*
4V9I|1|DA|U|447
4V9I|1|DA|A|448
4V9I|1|DA|A|449
4V9I|1|DA|G|450

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9