J4_4V9I_022

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V9I|1|DA|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_022 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0861

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9I|1|DA|G|1355
4V9I|1|DA|G|1356
4V9I|1|DA|U|1357
4V9I|1|DA|U|1358
4V9I|1|DA|C|1359
*
4V9I|1|DA|G|1383
4V9I|1|DA|G|1384
4V9I|1|DA|U|1385
4V9I|1|DA|U|1386
4V9I|1|DA|A|1387
4V9I|1|DA|G|1388
*
4V9I|1|DA|C|1449
4V9I|1|DA|U|1450
*
4V9I|1|DA|A|1642
4V9I|1|DA|C|1643
4V9I|1|DA|C|1644
4V9I|1|DA|C|1645
4V9I|1|DA|G|1646
4V9I|1|DA|U|1647
4V9I|1|DA|A|1648
4V9I|1|DA|C|1649

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23