J4_4V9I_026

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V9I|1|DA|A|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_026 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0646

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9I|1|DA|U|1863
4V9I|1|DA|U|1864
4V9I|1|DA|G|1865
*
4V9I|1|DA|C|1926
4V9I|1|DA|G|1927
*
4V9I|1|DA|C|1945
4V9I|1|DA|C|1946
4V9I|1|DA|U|1947
4V9I|1|DA|A|1948
4V9I|1|DA|A|1949
4V9I|1|DA|G|1950
4V9I|1|DA|G|1951
4V9I|1|DA|U|1952
4V9I|1|DA|A|1953
4V9I|1|DA|G|1954
*
4V9I|1|DA|C|1988
4V9I|1|DA|G|1989
4V9I|1|DA|A|1990
4V9I|1|DA|A|1991
4V9I|1|DA|A|1992
4V9I|1|DA|A|1993

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CV

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2