J4_4V9L_001

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V9L|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9L_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1381

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V9L|1|AA|G|115
4V9L|1|AA|A|116
4V9L|1|AA|G|117
4V9L|1|AA|U|118
4V9L|1|AA|A|119
4V9L|1|AA|A|120
4V9L|1|AA|C|121
4V9L|1|AA|G|122
*
4V9L|1|AA|U|239
4V9L|1|AA|C|240
*
4V9L|1|AA|G|286
4V9L|1|AA|U|287
4V9L|1|AA|A|288
4V9L|1|AA|G|289
*
4V9L|1|AA|C|311
4V9L|1|AA|C|312

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17