J4_4V9L_010

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4V9L|1|BA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9L_010 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1842

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9L|1|BA|U|1313
4V9L|1|BA|C|1314
*
4V9L|1|BA|G|1338
4V9L|1|BA|G|1339
4V9L|1|BA|U|1340
4V9L|1|BA|U|1341
4V9L|1|BA|A|1342
4V9L|1|BA|G|1343
*
4V9L|1|BA|C|1404
4V9L|1|BA|U|1405
*
4V9L|1|BA|A|1597
4V9L|1|BA|C|1598
4V9L|1|BA|C|1599
4V9L|1|BA|C|1600
4V9L|1|BA|G|1601
4V9L|1|BA|U|1602
4V9L|1|BA|A|1603

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23