J4_4V9Q_001

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V9Q|1|AA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9Q_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1387

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9Q|1|AA|C|268
4V9Q|1|AA|U|269
*
4V9Q|1|AA|G|370
4V9Q|1|AA|A|371
4V9Q|1|AA|G|372
4V9Q|1|AA|U|373
4V9Q|1|AA|A|374
4V9Q|1|AA|C|375
*
4V9Q|1|AA|G|399
4V9Q|1|AA|G|400
4V9Q|1|AA|A|401
4V9Q|1|AA|A|402
4V9Q|1|AA|U|403
4V9Q|1|AA|C|404
4V9Q|1|AA|U|405
4V9Q|1|AA|G|406
*
4V9Q|1|AA|U|421
4V9Q|1|AA|A|422
4V9Q|1|AA|A|423
4V9Q|1|AA|G|424

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L9

Chain AX

50S ribosomal protein L28