J4_4V9Q_010
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 4V9Q|1|AA|A|2288, 4V9Q|1|AA|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9Q_010 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.1636
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V9Q|1|AA|C|2285
4V9Q|1|AA|A|2286
4V9Q|1|AA|A|2287
4V9Q|1|AA|A|2288
4V9Q|1|AA|G|2289
*
4V9Q|1|AA|C|2343
4V9Q|1|AA|U|2344
4V9Q|1|AA|G|2345
4V9Q|1|AA|A|2346
4V9Q|1|AA|C|2347
*
4V9Q|1|AA|G|2370
4V9Q|1|AA|G|2371
4V9Q|1|AA|G|2372
*
4V9Q|1|AA|C|2381
4V9Q|1|AA|G|2382
4V9Q|1|AA|G|2383
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L33
- Chain A5
- 50S ribosomal protein L35
- Chain AO
- 50S ribosomal protein L18
- Chain AW
- 50S ribosomal protein L27
Coloring options: