J4_4V9S_011

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9S_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0507

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V9S|1|BA|G|1803
4V9S|1|BA|A|1804
4V9S|1|BA|C|1805
4V9S|1|BA|U|1806
4V9S|1|BA|G|1807
*
4V9S|1|BA|C|1819
4V9S|1|BA|A|1820
4V9S|1|BA|C|1821
4V9S|1|BA|A|1822
4V9S|1|BA|G|1823
*
4V9S|1|BA|C|1858
4V9S|1|BA|G|1859
4V9S|1|BA|A|1860
4V9S|1|BA|C|1861
*
4V9S|1|BA|G|1997
4V9S|1|BA|U|1998
4V9S|1|BA|A|1999
4V9S|1|BA|A|2000
4V9S|1|BA|C|2001

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S Ribosomal Protein L2