J4_4V9S_013
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 4V9S|1|BA|A|2300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9S_013 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1112
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V9S|1|BA|C|2297
4V9S|1|BA|A|2298
4V9S|1|BA|A|2299
4V9S|1|BA|A|2300
4V9S|1|BA|G|2301
*
4V9S|1|BA|C|2355
4V9S|1|BA|U|2356
4V9S|1|BA|G|2357
4V9S|1|BA|A|2358
4V9S|1|BA|C|2359
*
4V9S|1|BA|G|2382
4V9S|1|BA|G|2383
4V9S|1|BA|G|2384
*
4V9S|1|BA|C|2393
4V9S|1|BA|G|2394
4V9S|1|BA|G|2395
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- 50S Ribosomal Protein L27
- Chain B6
- 50S Ribosomal Protein L33
- Chain B8
- 50S Ribosomal Protein L35
- Chain BS
- 50S Ribosomal Protein L18
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