J4_4V9S_025
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CACAG*CGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9S_025 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0526
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V9S|1|DA|G|1772
4V9S|1|DA|A|1773
4V9S|1|DA|C|1774
4V9S|1|DA|U|1775
4V9S|1|DA|G|1776
*
4V9S|1|DA|C|1788
4V9S|1|DA|A|1789
4V9S|1|DA|C|1790
4V9S|1|DA|A|1791
4V9S|1|DA|G|1792
*
4V9S|1|DA|C|1827
4V9S|1|DA|G|1828
4V9S|1|DA|A|1829
4V9S|1|DA|C|1830
*
4V9S|1|DA|G|1975
4V9S|1|DA|U|1976
4V9S|1|DA|A|1977
4V9S|1|DA|A|1978
4V9S|1|DA|C|1979
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DD
- 50S Ribosomal Protein L2
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