J4_4W29_001

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4W29|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W29_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1603

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4W29|1|AA|G|115
4W29|1|AA|A|116
4W29|1|AA|G|117
4W29|1|AA|U|118
4W29|1|AA|A|119
4W29|1|AA|A|120
4W29|1|AA|C|121
4W29|1|AA|G|122
*
4W29|1|AA|U|239
4W29|1|AA|C|240
*
4W29|1|AA|G|286
4W29|1|AA|U|287
4W29|1|AA|A|288
4W29|1|AA|G|289
*
4W29|1|AA|C|311
4W29|1|AA|C|312

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17