J4_4W29_002

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W29_002 not in the Motif Atlas

Homologous match to J4_6CZR_012

Geometric discrepancy: 0.2333

The information below is about J4_6CZR_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W29|1|AA|G|142
4W29|1|AA|A|143
4W29|1|AA|G|144
*
4W29|1|AA|C|178
4W29|1|AA|A|179
4W29|1|AA|U|180
4W29|1|AA|G|181
4W29|1|AA|U|182
4W29|1|AA|G|183
*
4W29|1|AA|C|194
4W29|1|AA|A|195
4W29|1|AA|A|196
4W29|1|AA|A|197
4W29|1|AA|G|198
*
4W29|1|AA|C|219
4W29|1|AA|G|220
4W29|1|AA|C|221

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20