J4_4W29_003
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4W29|1|AA|G|576, 4W29|1|AA|A|815, 4W29|1|AA|C|817, 4W29|1|AA|G|818, 4W29|1|AA|A|819, 4W29|1|AA|U|820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W29_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.2115
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W29|1|AA|G|575
4W29|1|AA|G|576
4W29|1|AA|G|577
*
4W29|1|AA|C|764
4W29|1|AA|G|765
4W29|1|AA|A|766
4W29|1|AA|A|767
4W29|1|AA|A|768
4W29|1|AA|G|769
*
4W29|1|AA|C|810
4W29|1|AA|C|811
4W29|1|AA|C|812
4W29|1|AA|U|813
4W29|1|AA|A|814
4W29|1|AA|A|815
4W29|1|AA|A|816
4W29|1|AA|C|817
4W29|1|AA|G|818
4W29|1|AA|A|819
4W29|1|AA|U|820
4W29|1|AA|G|821
*
4W29|1|AA|C|879
4W29|1|AA|C|880
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AH
- 30S ribosomal protein S8
- Chain AK
- 30S ribosomal protein S11
- Chain AL
- 30S ribosomal protein S12
- Chain AO
- 30S ribosomal protein S15
- Chain AQ
- 30S ribosomal protein S17
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