J4_4W29_010

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4W29|1|BA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W29_010 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1817

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4W29|1|BA|G|1310
4W29|1|BA|G|1311
4W29|1|BA|U|1312
4W29|1|BA|U|1313
4W29|1|BA|C|1314
*
4W29|1|BA|G|1338
4W29|1|BA|G|1339
4W29|1|BA|U|1340
4W29|1|BA|U|1341
4W29|1|BA|A|1342
4W29|1|BA|G|1343
*
4W29|1|BA|C|1404
4W29|1|BA|U|1405
*
4W29|1|BA|A|1597
4W29|1|BA|C|1598
4W29|1|BA|C|1599
4W29|1|BA|C|1600
4W29|1|BA|G|1601
4W29|1|BA|U|1602
4W29|1|BA|A|1603
4W29|1|BA|C|1604

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23