J4_4W29_020
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAG*CAC*GGGGUCACAG*CCGUC
- Length
- 22 nucleotides
- Bulged bases
- 4W29|1|CW|U|8, 4W29|1|CW|U|47, 4W29|1|CW|C|48, 4W29|1|CW|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W29_020 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.5221
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4W29|1|CW|G|7
4W29|1|CW|U|8
4W29|1|CW|A|9
4W29|1|CW|G|10
*
4W29|1|CW|C|25
4W29|1|CW|A|26
4W29|1|CW|C|27
*
4W29|1|CW|G|43
4W29|1|CW|G|44
4W29|1|CW|G|45
4W29|1|CW|G|46
4W29|1|CW|U|47
4W29|1|CW|C|48
4W29|1|CW|A|49
4W29|1|CW|C|50
4W29|1|CW|A|51
4W29|1|CW|G|52
*
4W29|1|CW|C|62
4W29|1|CW|C|63
4W29|1|CW|G|64
4W29|1|CW|U|65
4W29|1|CW|C|66
Current chains
- Chain CW
- tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CK
- 30S ribosomal protein S11
- Chain CM
- 30S ribosomal protein S13
- Chain DC
- 50S ribosomal protein L1
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