J4_4W2E_007

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2E_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0557

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4W2E|1|A|G|1772
4W2E|1|A|A|1773
4W2E|1|A|C|1774
4W2E|1|A|U|1775
4W2E|1|A|G|1776
*
4W2E|1|A|C|1788
4W2E|1|A|A|1789
4W2E|1|A|C|1790
4W2E|1|A|A|1791
4W2E|1|A|G|1792
*
4W2E|1|A|C|1827
4W2E|1|A|G|1828
4W2E|1|A|A|1829
4W2E|1|A|C|1830
*
4W2E|1|A|G|1975
4W2E|1|A|U|1976
4W2E|1|A|A|1977
4W2E|1|A|A|1978
4W2E|1|A|C|1979

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA