J4_4W2E_012

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2E_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1004

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4W2E|1|a|G|142
4W2E|1|a|A|143
4W2E|1|a|G|144
*
4W2E|1|a|C|178
4W2E|1|a|A|179
4W2E|1|a|U|180
4W2E|1|a|G|181
4W2E|1|a|U|182
4W2E|1|a|G|183
*
4W2E|1|a|C|194
4W2E|1|a|A|195
4W2E|1|a|A|196
4W2E|1|a|A|197
4W2E|1|a|G|198
*
4W2E|1|a|C|219
4W2E|1|a|G|220
4W2E|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20