3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4W2G_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1052
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

4W2G|1|AA|G|142
4W2G|1|AA|A|143
4W2G|1|AA|G|144
*
4W2G|1|AA|C|178
4W2G|1|AA|A|179
4W2G|1|AA|U|180
4W2G|1|AA|G|181
4W2G|1|AA|U|182
4W2G|1|AA|G|183
*
4W2G|1|AA|C|194
4W2G|1|AA|A|195
4W2G|1|AA|A|196
4W2G|1|AA|A|197
4W2G|1|AA|G|198
*
4W2G|1|AA|C|219
4W2G|1|AA|G|220
4W2G|1|AA|C|221

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AT
30S Ribosomal Protein S20

Coloring options:


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