J4_4W2G_015
3D structure
- PDB id
- 4W2G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W2G_015 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1073
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4W2G|1|BA|C|2297
4W2G|1|BA|A|2298
4W2G|1|BA|A|2299
4W2G|1|BA|A|2300
4W2G|1|BA|G|2301
*
4W2G|1|BA|C|2355
4W2G|1|BA|U|2356
4W2G|1|BA|G|2357
4W2G|1|BA|A|2358
4W2G|1|BA|C|2359
*
4W2G|1|BA|G|2382
4W2G|1|BA|G|2383
4W2G|1|BA|G|2384
*
4W2G|1|BA|C|2393
4W2G|1|BA|G|2394
4W2G|1|BA|G|2395
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- 50S Ribosomal Protein L27
- Chain B6
- 50S Ribosomal Protein L33
- Chain B8
- 50S Ribosomal Protein L35
- Chain BS
- 50S Ribosomal Protein L18
Coloring options: