J4_4W2I_018

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2I_018 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0949

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4W2I|1|CA|G|142
4W2I|1|CA|A|143
4W2I|1|CA|G|144
*
4W2I|1|CA|C|178
4W2I|1|CA|A|179
4W2I|1|CA|U|180
4W2I|1|CA|G|181
4W2I|1|CA|U|182
4W2I|1|CA|G|183
*
4W2I|1|CA|C|194
4W2I|1|CA|A|195
4W2I|1|CA|A|196
4W2I|1|CA|A|197
4W2I|1|CA|G|198
*
4W2I|1|CA|C|219
4W2I|1|CA|G|220
4W2I|1|CA|C|221

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CT

30S Ribosomal Protein S20