J4_4W4G_017

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W4G_017 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1176

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4W4G|1|XA|G|142
4W4G|1|XA|A|143
4W4G|1|XA|G|144
*
4W4G|1|XA|C|178
4W4G|1|XA|A|179
4W4G|1|XA|U|180
4W4G|1|XA|G|181
4W4G|1|XA|U|182
4W4G|1|XA|G|183
*
4W4G|1|XA|C|194
4W4G|1|XA|A|195
4W4G|1|XA|A|196
4W4G|1|XA|A|197
4W4G|1|XA|G|198
*
4W4G|1|XA|C|219
4W4G|1|XA|G|220
4W4G|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20