J4_4WCE_008

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4WCE|1|X|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WCE_008 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.0877

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

4WCE|1|X|C|2312
4WCE|1|X|A|2313
4WCE|1|X|A|2314
4WCE|1|X|A|2315
4WCE|1|X|G|2316
*
4WCE|1|X|U|2370
4WCE|1|X|U|2371
4WCE|1|X|G|2372
4WCE|1|X|A|2373
4WCE|1|X|C|2374
*
4WCE|1|X|G|2397
4WCE|1|X|G|2398
4WCE|1|X|G|2399
*
4WCE|1|X|C|2408
4WCE|1|X|G|2409
4WCE|1|X|G|2410

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27