J4_4WF1_011

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WF1_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0355

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WF1|1|BA|A|1772
4WF1|1|BA|A|1773
4WF1|1|BA|C|1774
4WF1|1|BA|U|1775
4WF1|1|BA|G|1776
*
4WF1|1|BA|C|1788
4WF1|1|BA|A|1789
4WF1|1|BA|C|1790
4WF1|1|BA|A|1791
4WF1|1|BA|G|1792
*
4WF1|1|BA|U|1827
4WF1|1|BA|G|1828
4WF1|1|BA|A|1829
4WF1|1|BA|C|1830
*
4WF1|1|BA|G|1975
4WF1|1|BA|U|1976
4WF1|1|BA|A|1977
4WF1|1|BA|A|1978
4WF1|1|BA|U|1979

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2