J4_4WFA_007

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFA_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0648

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WFA|1|X|G|1799
4WFA|1|X|A|1800
4WFA|1|X|C|1801
4WFA|1|X|U|1802
4WFA|1|X|G|1803
*
4WFA|1|X|C|1815
4WFA|1|X|A|1816
4WFA|1|X|C|1817
4WFA|1|X|A|1818
4WFA|1|X|G|1819
*
4WFA|1|X|U|1854
4WFA|1|X|G|1855
4WFA|1|X|A|1856
4WFA|1|X|C|1857
*
4WFA|1|X|G|2002
4WFA|1|X|U|2003
4WFA|1|X|A|2004
4WFA|1|X|A|2005
4WFA|1|X|C|2006

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2