J4_4WFA_008

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4WFA|1|X|A|2315, 4WFA|1|X|G|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFA_008 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.0782

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

4WFA|1|X|C|2312
4WFA|1|X|A|2313
4WFA|1|X|A|2314
4WFA|1|X|A|2315
4WFA|1|X|G|2316
*
4WFA|1|X|U|2370
4WFA|1|X|U|2371
4WFA|1|X|G|2372
4WFA|1|X|A|2373
4WFA|1|X|C|2374
*
4WFA|1|X|G|2397
4WFA|1|X|G|2398
4WFA|1|X|G|2399
*
4WFA|1|X|C|2408
4WFA|1|X|G|2409
4WFA|1|X|G|2410

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27