J4_4WFB_007

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFB_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0709

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WFB|1|X|G|1799
4WFB|1|X|A|1800
4WFB|1|X|C|1801
4WFB|1|X|U|1802
4WFB|1|X|G|1803
*
4WFB|1|X|C|1815
4WFB|1|X|A|1816
4WFB|1|X|C|1817
4WFB|1|X|A|1818
4WFB|1|X|G|1819
*
4WFB|1|X|U|1854
4WFB|1|X|G|1855
4WFB|1|X|A|1856
4WFB|1|X|C|1857
*
4WFB|1|X|G|2002
4WFB|1|X|U|2003
4WFB|1|X|A|2004
4WFB|1|X|A|2005
4WFB|1|X|C|2006

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2