J4_4WFB_008

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFB_008 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.0827

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

4WFB|1|X|C|2312
4WFB|1|X|A|2313
4WFB|1|X|A|2314
4WFB|1|X|A|2315
4WFB|1|X|G|2316
*
4WFB|1|X|U|2370
4WFB|1|X|U|2371
4WFB|1|X|G|2372
4WFB|1|X|A|2373
4WFB|1|X|C|2374
*
4WFB|1|X|G|2397
4WFB|1|X|G|2398
4WFB|1|X|G|2399
*
4WFB|1|X|C|2408
4WFB|1|X|G|2409
4WFB|1|X|G|2410

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27