3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WOI_023 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0477
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4WOI|1|CA|A|1772
4WOI|1|CA|A|1773
4WOI|1|CA|C|1774
4WOI|1|CA|U|1775
4WOI|1|CA|G|1776
*
4WOI|1|CA|C|1788
4WOI|1|CA|A|1789
4WOI|1|CA|C|1790
4WOI|1|CA|A|1791
4WOI|1|CA|G|1792
*
4WOI|1|CA|U|1827
4WOI|1|CA|G|1828
4WOI|1|CA|A|1829
4WOI|1|CA|C|1830
*
4WOI|1|CA|G|1975
4WOI|1|CA|U|1976
4WOI|1|CA|A|1977
4WOI|1|CA|A|1978
4WOI|1|CA|U|1979

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CC
50S ribosomal protein L2

Coloring options:


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