J4_4WPO_005

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4WPO|1|AA|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0545

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WPO|1|AA|U|1359
4WPO|1|AA|C|1360
*
4WPO|1|AA|G|1384
4WPO|1|AA|G|1385
4WPO|1|AA|U|1386
4WPO|1|AA|U|1387
4WPO|1|AA|A|1388
4WPO|1|AA|G|1389
*
4WPO|1|AA|C|1450
4WPO|1|AA|U|1451
*
4WPO|1|AA|A|1643
4WPO|1|AA|C|1644
4WPO|1|AA|C|1645
4WPO|1|AA|C|1646
4WPO|1|AA|G|1647
4WPO|1|AA|U|1648
4WPO|1|AA|A|1649

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AX

50S ribosomal protein L23