J4_4WPO_012

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WPO|1|BA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0913

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WPO|1|BA|G|142
4WPO|1|BA|A|143
4WPO|1|BA|G|144
*
4WPO|1|BA|C|178
4WPO|1|BA|A|179
4WPO|1|BA|U|180
4WPO|1|BA|G|181
4WPO|1|BA|U|182
4WPO|1|BA|G|183
*
4WPO|1|BA|C|194
4WPO|1|BA|A|195
4WPO|1|BA|A|196
4WPO|1|BA|A|197
4WPO|1|BA|G|198
*
4WPO|1|BA|C|219
4WPO|1|BA|G|220
4WPO|1|BA|C|221

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BT

30S ribosomal protein S20