J4_4WQ1_014

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WQ1|1|1G|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQ1_014 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.119

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WQ1|1|1G|G|142
4WQ1|1|1G|A|143
4WQ1|1|1G|G|144
*
4WQ1|1|1G|C|178
4WQ1|1|1G|A|179
4WQ1|1|1G|U|180
4WQ1|1|1G|G|181
4WQ1|1|1G|U|182
4WQ1|1|1G|G|183
*
4WQ1|1|1G|C|194
4WQ1|1|1G|A|195
4WQ1|1|1G|A|196
4WQ1|1|1G|A|197
4WQ1|1|1G|G|198
*
4WQ1|1|1G|C|219
4WQ1|1|1G|G|220
4WQ1|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20