J4_4WQF_020

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4WQF|1|CA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQF_020 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0654

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WQF|1|CA|U|1313
4WQF|1|CA|C|1314
*
4WQF|1|CA|G|1338
4WQF|1|CA|G|1339
4WQF|1|CA|U|1340
4WQF|1|CA|U|1341
4WQF|1|CA|A|1342
4WQF|1|CA|G|1343
*
4WQF|1|CA|C|1404
4WQF|1|CA|U|1405
*
4WQF|1|CA|A|1597
4WQF|1|CA|C|1598
4WQF|1|CA|C|1599
4WQF|1|CA|C|1600
4WQF|1|CA|G|1601
4WQF|1|CA|U|1602
4WQF|1|CA|A|1603

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23