J4_4WQF_027

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQF_027 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1237

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WQF|1|DA|G|142
4WQF|1|DA|A|143
4WQF|1|DA|G|144
*
4WQF|1|DA|C|178
4WQF|1|DA|A|179
4WQF|1|DA|U|180
4WQF|1|DA|G|181
4WQF|1|DA|U|182
4WQF|1|DA|G|183
*
4WQF|1|DA|C|194
4WQF|1|DA|A|195
4WQF|1|DA|A|196
4WQF|1|DA|A|197
4WQF|1|DA|G|198
*
4WQF|1|DA|C|219
4WQF|1|DA|G|220
4WQF|1|DA|C|221

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DT

30S ribosomal protein S20