J4_4WQR_032

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WQR|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQR_032 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1717

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WQR|1|13|G|142
4WQR|1|13|A|143
4WQR|1|13|G|144
*
4WQR|1|13|C|178
4WQR|1|13|A|179
4WQR|1|13|U|180
4WQR|1|13|G|181
4WQR|1|13|U|182
4WQR|1|13|G|183
*
4WQR|1|13|C|194
4WQR|1|13|A|195
4WQR|1|13|A|196
4WQR|1|13|A|197
4WQR|1|13|G|198
*
4WQR|1|13|C|219
4WQR|1|13|G|220
4WQR|1|13|C|221

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20