J4_4WQU_007

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0505

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|AA|G|1803
4WQU|1|AA|A|1804
4WQU|1|AA|C|1805
4WQU|1|AA|U|1806
4WQU|1|AA|G|1807
*
4WQU|1|AA|C|1819
4WQU|1|AA|A|1820
4WQU|1|AA|C|1821
4WQU|1|AA|A|1822
4WQU|1|AA|G|1823
*
4WQU|1|AA|C|1858
4WQU|1|AA|G|1859
4WQU|1|AA|A|1860
4WQU|1|AA|C|1861
*
4WQU|1|AA|G|1997
4WQU|1|AA|U|1998
4WQU|1|AA|A|1999
4WQU|1|AA|A|2000
4WQU|1|AA|C|2001

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA