J4_4WQU_009

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.0975

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|C|2297
4WQU|1|AA|A|2298
4WQU|1|AA|A|2299
4WQU|1|AA|A|2300
4WQU|1|AA|G|2301
*
4WQU|1|AA|C|2355
4WQU|1|AA|U|2356
4WQU|1|AA|G|2357
4WQU|1|AA|A|2358
4WQU|1|AA|C|2359
*
4WQU|1|AA|G|2382
4WQU|1|AA|G|2383
4WQU|1|AA|G|2384
*
4WQU|1|AA|C|2393
4WQU|1|AA|G|2394
4WQU|1|AA|G|2395

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain A6

50S ribosomal protein L33

Chain A8

50S ribosomal protein L35

Chain AS

50S ribosomal protein L18