J4_4WQU_016

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WQU|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_016 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0965

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|CA|C|268
4WQU|1|CA|U|269
*
4WQU|1|CA|G|370
4WQU|1|CA|A|371
4WQU|1|CA|G|372
4WQU|1|CA|U|373
4WQU|1|CA|A|374
4WQU|1|CA|C|375
*
4WQU|1|CA|G|399
4WQU|1|CA|G|400
4WQU|1|CA|A|401
4WQU|1|CA|A|402
4WQU|1|CA|U|403
4WQU|1|CA|C|404
4WQU|1|CA|U|405
4WQU|1|CA|G|406
*
4WQU|1|CA|U|421
4WQU|1|CA|A|422
4WQU|1|CA|A|423
4WQU|1|CA|G|424

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28